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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6815968_6819099_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6815968 - 6819099
Intron Length:
3132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
ATATCTGTTACT
Flanking Amino Acid:
SMWRTRAAAACVICRSLAKS
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
62
37
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
89.1
0.88
0.6
88.9
20.4
Minor 5ss
32.3
-2
3.3
39.1
40.7
Minor BPS
49.7
0.06
2.3
74.75
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003902
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028440
6815639 - 6866350
50712
ENSAPLT00000004090
6815639 - 6866350
50712
ENSAPLT00000039713
6815639 - 6866350
50712