About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6823101_6833604_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6823101 - 6833604
Intron Length:
10504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
GTAGCCATGATT
Flanking Amino Acid:
GYDNDKQYKKVSDKEKIDQL
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1.1
84.4
33.5
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
92.1
0.95
0.5
89.1
19.9
Minor 5ss
43.9
-0.7
2.6
61.4
42.9
Minor BPS
51.7
0.13
1.7
69.58
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003902
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004090
6815639 - 6866350
50712