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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6834195_6835127_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6834195 - 6835127
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTACG
5'SS Class:
major
3'SS Sequence:
TTTATTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
DKGIHQRKLKKSLIDMYSEV
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
68.4
42.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
88.4
0.86
0.7
85
29.6
Minor 5ss
35
-1.7
2.8
43.8
43.3
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003902
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004090
6815639 - 6866350
50712
ENSAPLT00000039713
6815639 - 6866350
50712
ENSAPLT00000028440
6815639 - 6866350
50712