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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6835215_6836152_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6835215 - 6836152
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
ACTTTCTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTGTTTAAAACT
Flanking Amino Acid:
SYNTQDHLPRVVVVGDQSAG
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
67.9
39.2
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
72.8
0.51
1
76.3
32
Minor 5ss
34.8
-1.7
2.9
37.7
40.9
Minor BPS
52.1
0.14
1.9
75.77
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003902
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039713
6815639 - 6866350
50712
ENSAPLT00000028440
6815639 - 6866350
50712
ENSAPLT00000004090
6815639 - 6866350
50712