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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6836267_6836621_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6836267 - 6836621
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACCATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GCTTTCTCAAGT
Flanking Amino Acid:
GEMMTRSPVKVTLSEGPHHV
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
81.2
0.7
0.9
78.8
34.5
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
55.3
0.24
1.9
72.31
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003902
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039713
6815639 - 6866350
50712
ENSAPLT00000028440
6815639 - 6866350
50712
ENSAPLT00000004090
6815639 - 6866350
50712