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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6837578_6837728_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6837578 - 6837728
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TCTGTATAAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTCCTTTAAAT
Flanking Amino Acid:
VLVDLPGVISTVTSGMAPDT
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74.7
41.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
56
0.14
1.2
57.6
40.7
Minor 5ss
41.3
-1
2.8
52.3
44.3
Minor BPS
77.7
0.95
1.3
90.96
31.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003902
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039713
6815639 - 6866350
50712
ENSAPLT00000028440
6815639 - 6866350
50712
ENSAPLT00000004090
6815639 - 6866350
50712