Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6837829_6838380_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6837829 - 6838380

Intron Length:

552

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACAAGA

5'SS Class:

major

3'SS Sequence:

CTGTTTGTTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTATAT

U12 Branch Point Sequence:

AGTCCCTAAAAT

Flanking Amino Acid:

NPNAIILCIQDGSVDAERSI

Intron Amino Acid Position:

555

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

1.1

71.7

40.1

Major BPS

66.9

0.42

1.1

64.7

41.3

Major PPT

78.2

0.64

0.9

76.9

37.3

Minor 5ss

38.4

-1.3

2.9

49.8

Minor BPS

57.4

0.31

1.8

74.47

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003902

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028440

6815639 - 6866350

50712

ENSAPLT00000004090

6815639 - 6866350

50712

ENSAPLT00000039713

6815639 - 6866350

50712