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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6839137_6839227_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6839137 - 6839227
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
CTAAATAGAACT
Flanking Amino Acid:
LGYFAVVTGKGNSSESIESI
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
91.6
0.94
0.6
84.9
29.9
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
43.7
-0.4
1.8
60.75
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003902
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028440
6815639 - 6866350
50712
ENSAPLT00000004090
6815639 - 6866350
50712
ENSAPLT00000039713
6815639 - 6866350
50712