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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6839301_6839615_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6839301 - 6839615
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTTGA
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGCAT
U12 Branch Point Sequence:
TTTCCTATAACT
Flanking Amino Acid:
EEFFQNSKLLKTSMLKAHQV
Intron Amino Acid Position:
647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
70.4
36.3
Major BPS
67.2
0.43
1.4
77.7
37.1
Major PPT
85.7
0.8
0.8
79.7
32.4
Minor 5ss
47.4
-0.3
2.4
57.5
45.2
Minor BPS
72.3
0.78
1.6
90.67
32.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003902
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028440
6815639 - 6866350
50712
ENSAPLT00000004090
6815639 - 6866350
50712
ENSAPLT00000039713
6815639 - 6866350
50712