Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6839732_6840326_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6839732 - 6840326

Intron Length:

595

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAACATT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

GTTTTCTGATTT

Flanking Amino Acid:

SVEQQADAFKATRFNLETEW

Intron Amino Acid Position:

686

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

84.2

33.9

Major BPS

81.6

0.78

0.8

24.9

Major PPT

92.7

0.96

0.6

88.4

21.2

Minor 5ss

44.7

-0.6

3.1

45.2

Minor BPS

58.1

0.33

1.7

77.22

39.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003902

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039713

6815639 - 6866350

50712

ENSAPLT00000028440

6815639 - 6866350

50712

ENSAPLT00000004090

6815639 - 6866350

50712