About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6841092_6842554_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6841092 - 6842554
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGGTAG
5'SS Class:
major
3'SS Sequence:
CTTTCTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
GATATTATAACT
Flanking Amino Acid:
ISLTQVTPKHWEEILQKTLW
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
59.4
41.9
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
83.2
0.75
0.7
81.9
28.4
Minor 5ss
35.1
-1.7
3.4
42.8
46.7
Minor BPS
54.5
0.22
1.6
71.48
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003902
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028440
6815639 - 6866350
50712
ENSAPLT00000004090
6815639 - 6866350
50712
ENSAPLT00000039713
6815639 - 6866350
50712