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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6842721_6843294_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6842721 - 6843294
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCTGACTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GTCTTCTGACTT
Flanking Amino Acid:
DKQLPNKAVEVAWETLQEEF
Intron Amino Acid Position:
789

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
85.7
30.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
74.7
0.56
0.9
65.9
40.6
Minor 5ss
35.8
-1.6
3
49.8
46.1
Minor BPS
50.9
0.11
1.7
68.72
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003902
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039713
6815639 - 6866350
50712
ENSAPLT00000028440
6815639 - 6866350
50712
ENSAPLT00000004090
6815639 - 6866350
50712