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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6843448_6843962_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6843448 - 6843962
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATAATGT
5'SS Class:
major
3'SS Sequence:
TTCTGTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATTACTTATTT
Flanking Amino Acid:
KWNERAEDSLRVIQHNALED
Intron Amino Acid Position:
840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1
60.2
39.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.9
0.74
0.9
77.4
35.6
Minor 5ss
45.2
-0.5
3
62
44.6
Minor BPS
60.1
0.4
1.8
76.87
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003902
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039713
6815639 - 6866350
50712
ENSAPLT00000028440
6815639 - 6866350
50712
ENSAPLT00000004090
6815639 - 6866350
50712