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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6846213_6847278_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6846213 - 6847278
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATATATTTAAGT
Flanking Amino Acid:
ARGITVDPCLIKDTWHQIYR
Intron Amino Acid Position:
950

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.6
37.4
Major BPS
79
0.72
1
78.4
31.2
Major PPT
71.2
0.48
1
65.8
45.3
Minor 5ss
38.4
-1.3
3.1
47.7
42.5
Minor BPS
59.2
0.37
1.8
76.17
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003902
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039713
6815639 - 6866350
50712
ENSAPLT00000028440
6815639 - 6866350
50712
ENSAPLT00000004090
6815639 - 6866350
50712