Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6847396_6848700_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6847396 - 6848700

Intron Length:

1305

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAATGT

5'SS Class:

strong_major

3'SS Sequence:

TCCTTCATTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTTCAT

U12 Branch Point Sequence:

ACTTCCTTCATT

Flanking Amino Acid:

YYQRHFVDSELECNDIVLFW

Intron Amino Acid Position:

989

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

74.9

36.1

Major BPS

0.62

1.1

77.2

Major PPT

83.6

0.76

0.8

81.2

29.2

Minor 5ss

-1.2

3.2

56.6

47.5

Minor BPS

0.68

1.7

81.92

40.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003902

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039713

6815639 - 6866350

50712

ENSAPLT00000028440

6815639 - 6866350

50712

ENSAPLT00000004090

6815639 - 6866350

50712