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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6865751_6866269_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
6865751 - 6866269
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCACG
5'SS Class:
major
3'SS Sequence:
CTTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGCATTTTAAAA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
68.2
42.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.2
0.81
0.8
84.1
30.8
Minor 5ss
39.8
-1.1
2.8
50
45.9
Minor BPS
55.4
0.17
1.4
61.45
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003902
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039713
6815639 - 6866350
50712
ENSAPLT00000028440
6815639 - 6866350
50712
ENSAPLT00000004090
6815639 - 6866350
50712