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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6875853_6876905_F

Intron Information:

Intron Rank:
131106
Intron Class:
major
Intron Phase:
Intron Coordinates:
6875853 - 6876905
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TATTACATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
CTGTCCTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
73.9
0.59
1
81
30.2
Major PPT
78
0.63
0.9
71.1
38.9
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
68.9
0.59
1.7
74.81
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020427
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031639
6874693 - 6880932
6240