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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6880999_6882229_F

Intron Information:

Intron Rank:
140975
Intron Class:
major
Intron Phase:
Intron Coordinates:
6880999 - 6882229
Intron Length:
1231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTAACTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTTTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
79.4
0.66
0.9
78.6
33.5
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
73.3
0.81
1.6
92.08
30.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025919
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022961
6880953 - 6886880
5928