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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6911532_6918316_F

Intron Information:

Intron Rank:
141678
Intron Class:
major
Intron Phase:
Intron Coordinates:
6911532 - 6918316
Intron Length:
6785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TTTACATTGGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTATCCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
69.8
0.45
1
66.7
39.4
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
77.4
0.86
1.5
84.59
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026300
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027731
6911223 - 6927250
16028