Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7014225_7017522_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7014225 - 7017522

Intron Length:

3298

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGGCTG

5'SS Class:

major

3'SS Sequence:

GGTGGGCTTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGGT

U12 Branch Point Sequence:

TGCTGGTGGGCT

Flanking Amino Acid:

LSLCIAWGCLLAHGQCPEQC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

62.2

43.8

Major BPS

30.2

-1.2

4.2

51.1

46.3

Major PPT

63.2

0.3

1.1

50.5

Minor 5ss

29.1

-2.4

3.3

35.3

42.3

Minor BPS

28.8

-1.5

3.7

56.04

46.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029621

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031285

7012544 - 7017573

5030