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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7027175_7032052_R

Intron Information:

Intron Rank:
33
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7027175 - 7032052
Intron Length:
4878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTCATATC
5'SS Class:
weak_major
3'SS Sequence:
TTTCTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
ATTTTGGTAACT
Flanking Amino Acid:
TEAKVPSQENESFRL*
Intron Amino Acid Position:
1244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.2
0.22
1.2
63.5
40.7
Major BPS
69
0.47
1
69.9
32.6
Major PPT
90.6
0.91
0.6
89.1
20
Minor 5ss
35.1
-1.7
3
43.3
38.2
Minor BPS
50.7
0.1
2.6
81.49
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004439
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004608
7027158 - 7083534
56377