Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7033816_7037226_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7033816 - 7037226

Intron Length:

3411

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAAAT

5'SS Class:

strong_major

3'SS Sequence:

CAATATCTCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATTTTTTTAATT

Flanking Amino Acid:

INAAVSVLTETVLLDMILWK

Intron Amino Acid Position:

1158

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.9

1.03

0.7

89.8

22.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

68.7

0.42

0.9

61.2

39.3

Minor 5ss

35.1

-1.7

3.1

48.5

47.2

Minor BPS

80.4

1.03

0.9

89.47

28.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004439

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037787

7031024 - 7082991

51968

ENSAPLT00000031918

7031024 - 7083534

52511

ENSAPLT00000004608

7027158 - 7083534

56377

ENSAPLT00000044472

7031024 - 7082991

51968