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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7037308_7037737_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7037308 - 7037737
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACTTCTTTCACA
Flanking Amino Acid:
PVESIDAFLELVCVPYDWRL
Intron Amino Acid Position:
1131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.3
0.7
0.8
75.8
32
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
65.1
0.47
1.7
73.1
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004439
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037787
7031024 - 7082991
51968
ENSAPLT00000031918
7031024 - 7083534
52511
ENSAPLT00000017208
7031024 - 7082991
51968
ENSAPLT00000004608
7027158 - 7083534
56377
ENSAPLT00000044472
7031024 - 7082991
51968