Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7041849_7042699_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7041849 - 7042699

Intron Length:

851

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGCCA

5'SS Class:

major

3'SS Sequence:

TTTGTTTTGACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAA

U12 Branch Point Sequence:

TTTGTTTTGACA

Flanking Amino Acid:

PNISCVPKLIREGRAALITS

Intron Amino Acid Position:

923

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

65.1

40.5

Major BPS

78.4

0.71

0.9

81.3

29.8

Major PPT

82.5

0.73

79.9

37.7

Minor 5ss

31.1

-2.2

3.2

40.1

45.4

Minor BPS

68.4

0.57

1.3

77.15

33.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004439

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031918

7031024 - 7083534

52511

ENSAPLT00000017208

7031024 - 7082991

51968

ENSAPLT00000004608

7027158 - 7083534

56377

ENSAPLT00000044472

7031024 - 7082991

51968

ENSAPLT00000037787

7031024 - 7082991

51968