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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7042950_7043763_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7042950 - 7043763
Intron Length:
814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TTGTTCTTTATA
Flanking Amino Acid:
TQLVEALQNVDYYVGMCGDG
Intron Amino Acid Position:
872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
84.6
33.2
Major BPS
72
0.55
1
71.8
31.4
Major PPT
84.9
0.79
0.7
80.6
31.5
Minor 5ss
42.9
-0.8
2.9
57
41.2
Minor BPS
65.4
0.48
1.6
74.21
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004439
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031918
7031024 - 7083534
52511
ENSAPLT00000017208
7031024 - 7082991
51968
ENSAPLT00000004608
7027158 - 7083534
56377
ENSAPLT00000044472
7031024 - 7082991
51968
ENSAPLT00000037787
7031024 - 7082991
51968