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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7044048_7044519_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7044048 - 7044519
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTACTTTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GAAATTTAAACT
Flanking Amino Acid:
TSSSPAINSEDIPVKLVHES
Intron Amino Acid Position:
805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
76.9
34.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
70.8
0.47
1
68.3
37.3
Minor 5ss
39.6
-1.2
2.8
50.5
45.7
Minor BPS
49.2
0.02
1.7
63.06
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004439
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037787
7031024 - 7082991
51968
ENSAPLT00000031918
7031024 - 7083534
52511
ENSAPLT00000017208
7031024 - 7082991
51968
ENSAPLT00000004608
7027158 - 7083534
56377
ENSAPLT00000044472
7031024 - 7082991
51968