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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7046715_7046810_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7046715 - 7046810
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
CCATATTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAC
U12 Branch Point Sequence:
TGTCCCATATTA
Flanking Amino Acid:
DQEMELFELSTGYEIGIVRQ
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
66
0.4
1.1
57.8
38.6
Major PPT
66.7
0.38
1
60.7
38.9
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
50.7
0.02
1.9
66.94
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004439
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037787
7031024 - 7082991
51968
ENSAPLT00000031918
7031024 - 7083534
52511
ENSAPLT00000017208
7031024 - 7082991
51968
ENSAPLT00000004608
7027158 - 7083534
56377
ENSAPLT00000044472
7031024 - 7082991
51968