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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7046829_7048394_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7046829 - 7048394
Intron Length:
1566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATAAAAA
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTACAATAAAT
Flanking Amino Acid:
ESKQATDQEMELFELSTGYE
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1
64.7
34.4
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
91.7
0.94
0.5
92.2
18.3
Minor 5ss
38.4
-1.3
2.9
45.1
44.9
Minor BPS
53.8
0.2
2
81.05
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004439
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031918
7031024 - 7083534
52511
ENSAPLT00000017208
7031024 - 7082991
51968
ENSAPLT00000004608
7027158 - 7083534
56377
ENSAPLT00000044472
7031024 - 7082991
51968
ENSAPLT00000037787
7031024 - 7082991
51968