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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7048512_7048977_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7048512 - 7048977
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTAATTTGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATGTATTTAAAA
Flanking Amino Acid:
DLKMFEAIGWILEEATEEET
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.6
34.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73.7
0.53
1
68.2
42
Minor 5ss
36.8
-1.5
3.3
44.3
43.6
Minor BPS
59.5
0.3
1.6
68.04
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004439
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031918
7031024 - 7083534
52511
ENSAPLT00000017208
7031024 - 7082991
51968
ENSAPLT00000004608
7027158 - 7083534
56377
ENSAPLT00000044472
7031024 - 7082991
51968
ENSAPLT00000037787
7031024 - 7082991
51968