Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7049129_7049700_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7049129 - 7049700

Intron Length:

572

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGGAGA

5'SS Class:

strong_major

3'SS Sequence:

TTCATTGTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATTAT

U12 Branch Point Sequence:

TATATTATAACT

Flanking Amino Acid:

LWGIQRVENARFLLPEERAC

Intron Amino Acid Position:

516

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

42.1

Major BPS

75.9

0.64

66.1

40.5

Major PPT

82.6

0.73

0.9

80.3

37.1

Minor 5ss

32.1

-2

3.1

40.4

45.5

Minor BPS

60.4

0.4

1.6

78.58

37.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004439

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037787

7031024 - 7082991

51968

ENSAPLT00000031918

7031024 - 7083534

52511

ENSAPLT00000017208

7031024 - 7082991

51968

ENSAPLT00000004608

7027158 - 7083534

56377

ENSAPLT00000044472

7031024 - 7082991

51968