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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7049763_7050678_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7049763 - 7050678
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGGTGA
5'SS Class:
major
3'SS Sequence:
GTTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAC
U12 Branch Point Sequence:
TTTCTTGCCACT
Flanking Amino Acid:
GQLNLVCFDKTGTLTEDGLD
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
58.7
42.8
Major BPS
52.3
0.06
1.4
64.2
43
Major PPT
83
0.74
0.8
81.2
36.5
Minor 5ss
31.1
-2.2
3.3
38.8
46.4
Minor BPS
42
-0.5
2.4
68.64
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004439
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031918
7031024 - 7083534
52511
ENSAPLT00000017208
7031024 - 7082991
51968
ENSAPLT00000004608
7027158 - 7083534
56377
ENSAPLT00000044472
7031024 - 7082991
51968
ENSAPLT00000037787
7031024 - 7082991
51968