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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7051677_7052540_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7051677 - 7052540
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGACT
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AATTCATTCATT
Flanking Amino Acid:
ELVKALVVRTGFSTAKGQLV
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
71.1
38.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
40.3
-1.1
3.2
58.1
46.3
Minor BPS
55.8
0.26
2
76.94
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004439
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031918
7031024 - 7083534
52511
ENSAPLT00000017208
7031024 - 7082991
51968
ENSAPLT00000004608
7027158 - 7083534
56377
ENSAPLT00000037787
7031024 - 7082991
51968