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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7051677_7053674_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7051677 - 7053674
Intron Length:
1998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTCG
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AATTCATTCATT
Flanking Amino Acid:
TCIVNESMLTGFSTAKGQLV
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.4
39.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
36.4
-1.5
3.3
47.6
48
Minor BPS
55.8
0.26
2
76.94
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004439
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044472
7031024 - 7082991
51968