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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7052721_7053674_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7052721 - 7053674
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTCG
5'SS Class:
major
3'SS Sequence:
TTTTCCATTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
CTTATTTTACTT
Flanking Amino Acid:
TCIVNESMLTGESVPVTKIN
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.4
39.9
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
76.8
0.6
1
80.7
30.1
Minor 5ss
36.4
-1.5
3.3
47.6
48
Minor BPS
54.4
0.22
1.6
71.2
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004439
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037787
7031024 - 7082991
51968
ENSAPLT00000031918
7031024 - 7083534
52511
ENSAPLT00000017208
7031024 - 7082991
51968
ENSAPLT00000004608
7027158 - 7083534
56377