Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7053807_7054533_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7053807 - 7054533

Intron Length:

727

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTTC

5'SS Class:

strong_major

3'SS Sequence:

TTCTGATGCTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TTTCAGGTAAAA

Flanking Amino Acid:

VRVSVCRGNQEIEEILSTDL

Intron Amino Acid Position:

276

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

0.8

84.7

26.5

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

67.2

0.39

65.9

39.9

Minor 5ss

44.1

-0.6

2.9

61.1

43.8

Minor BPS

41.5

-0.6

2.6

63.19

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004439

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037787

7031024 - 7082991

51968

ENSAPLT00000031918

7031024 - 7083534

52511

ENSAPLT00000017208

7031024 - 7082991

51968

ENSAPLT00000004608

7027158 - 7083534

56377

ENSAPLT00000044472

7031024 - 7082991

51968