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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7054607_7055304_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7054607 - 7055304
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TGTGCTTCAAAA
Flanking Amino Acid:
IVSSLYTIRKQYVMLHDMVA
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
79
0.65
0.7
73.5
24.6
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
52.8
0.08
1.7
65.65
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004439
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031918
7031024 - 7083534
52511
ENSAPLT00000017208
7031024 - 7082991
51968
ENSAPLT00000004608
7027158 - 7083534
56377
ENSAPLT00000044472
7031024 - 7082991
51968
ENSAPLT00000037787
7031024 - 7082991
51968