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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7061066_7061396_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7061066 - 7061396
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
GTTGCCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTGATATTCATG
Flanking Amino Acid:
NKNDLKKYLPIRYFTHHSVK
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
77.4
0.62
0.9
69.9
36.5
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
44.4
-0.5
2
52.4
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004439
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037787
7031024 - 7082991
51968
ENSAPLT00000031918
7031024 - 7083534
52511
ENSAPLT00000017208
7031024 - 7082991
51968
ENSAPLT00000004608
7027158 - 7083534
56377
ENSAPLT00000044472
7031024 - 7082991
51968