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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7062644_7064926_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7062644 - 7064926
Intron Length:
2283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGTTTCTATACA
Flanking Amino Acid:
FVNKAEEDEMEIYGYELCRW
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
85.5
30.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
82.3
0.73
0.9
77.1
36.3
Minor 5ss
41.9
-0.9
2.9
57.4
41.1
Minor BPS
55.3
0.16
2
71.5
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004439
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037787
7031024 - 7082991
51968
ENSAPLT00000031918
7031024 - 7083534
52511
ENSAPLT00000017208
7031024 - 7082991
51968
ENSAPLT00000004608
7027158 - 7083534
56377
ENSAPLT00000044472
7031024 - 7082991
51968