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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7104691_7105255_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7104691 - 7105255
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TACTTCTGATTT
Flanking Amino Acid:
TAEELLTAFGYMRGFMTAHG
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
27.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
83.1
0.75
0.9
74.1
41
Minor 5ss
36.8
-1.5
3.4
53.7
43.8
Minor BPS
52.1
0.14
1.7
69.34
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004678
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004856
7102293 - 7113851
11559