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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7108929_7109583_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7108929 - 7109583
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTTCTCTTATTT
Flanking Amino Acid:
NPLLFRCQDLESYVKEVSSD
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
90.1
0.9
0.7
89.2
27.5
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
68.2
0.65
1.5
84.89
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004678
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004856
7102293 - 7113851
11559