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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7109717_7112767_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7109717 - 7112767
Intron Length:
3051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
AAATGAAAGTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATTCATTTAAAA
Flanking Amino Acid:
SFLEWRRQLAHKAFLLFLWQ
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
71.9
39.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
39.9
-0.5
1.7
34.5
43.8
Minor 5ss
36.1
-1.6
2.9
48.1
41.6
Minor BPS
58.8
0.27
1.6
69.92
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004678
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004856
7102293 - 7113851
11559