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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7170340_7190921_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7170340 - 7190921
Intron Length:
20582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
CTCGTGCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CGTGCCTTACTC
Flanking Amino Acid:
SVAMHRIMPPEITQIIQVDL
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
74.8
0.56
0.9
64.9
41.3
Minor 5ss
42.4
-0.8
3.1
59.1
45.6
Minor BPS
54.6
0.12
1.8
62.34
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020144
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032546
7159188 - 7196708
37521
ENSAPLT00000045148
7127475 - 7196708
69234
ENSAPLT00000034363
7127475 - 7196708
69234