About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7191070_7193107_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7191070 - 7193107
Intron Length:
2038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTGCT
5'SS Class:
major
3'SS Sequence:
GTGTCTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGGAT
U12 Branch Point Sequence:
CGTGGCTGAGCG
Flanking Amino Acid:
SDELSQHTSLIITHDVNELT
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
71.7
38.2
Major BPS
46.5
-0.2
1.5
45
47.8
Major PPT
70.3
0.46
0.9
62.3
39.8
Minor 5ss
34.4
-1.8
3.4
47.2
43.5
Minor BPS
40.9
-0.8
2.1
44.66
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020144
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034363
7127475 - 7196708
69234