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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7193189_7196330_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7193189 - 7196330
Intron Length:
3142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAC
U12 Branch Point Sequence:
CTGCTGGTAACC
Flanking Amino Acid:
ELGRAAFPHQRLGEVLRTPC
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
59.3
0.23
1.3
61.4
43.2
Major PPT
84.6
0.78
0.7
76.7
31.9
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
42
-0.6
2.5
54.46
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020144
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034363
7127475 - 7196708
69234