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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_72313_74053_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72313 - 74053
Intron Length:
1741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGGCTTATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGTCTCTATTT
Flanking Amino Acid:
HLLKENKVEYRVLINNLKTA
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
100
1.24
0.5
100
0
Major PPT
76.1
0.59
1
70
40.2
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
49.7
0.06
1.9
70.61
41

Associated Gene:

Gene:
CPB1
Ensembl Gene ID:
ENSAPLG00000014834
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038325
54238 - 128396
74159
ENSAPLT00000022744
54238 - 80561
26324
ENSAPLT00000015506
54238 - 76917
22680