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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7239217_7239711_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7239217 - 7239711
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TCATTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CTATCTTTCATT
Flanking Amino Acid:
IKAQLQTFVKEDIKKFKDAK
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
67.9
39.2
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
82.1
0.72
0.7
81.4
30.3
Minor 5ss
34.8
-1.7
2.9
37.7
40.9
Minor BPS
60.9
0.43
1.7
75.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004811
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037838
7200538 - 7247817
47280
ENSAPLT00000005054
7200538 - 7247817
47280