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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7270667_7271798_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7270667 - 7271798
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTAAAAT
Flanking Amino Acid:
EDEELTPEEREKKKQFEMKR
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
78
38.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85
0.79
0.8
80.2
32
Minor 5ss
41.6
-0.9
3.2
56.7
47.6
Minor BPS
58.4
0.34
1.7
77.29
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026440
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037173
7269029 - 7277028
8000