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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7271903_7272188_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7271903 - 7272188
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATGCTTTATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TATGCTTTATGT
Flanking Amino Acid:
EPLKADVLSKKLAAAAEGRG
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
71
0.47
0.9
66.7
39
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
51.3
0.12
2
72.42
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026440
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037173
7269029 - 7277028
8000