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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7272270_7272705_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7272270 - 7272705
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTATTGATAAAG
Flanking Amino Acid:
KIDEPSTPYHSMVGDDDEDA
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
69.7
0.44
1
67.8
38
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
45.1
-0.5
2.3
58.16
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026440
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037173
7269029 - 7277028
8000