Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7287638_7288449_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7287638 - 7288449

Intron Length:

812

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGCCATGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGCCAT

U12 Branch Point Sequence:

TTGTCTGTAAGG

Flanking Amino Acid:

STCLSGWGFQRSWQVMCRAL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.9

1.06

0.6

14.8

Major BPS

62.2

0.3

1.4

72.5

43.5

Major PPT

0.68

0.9

74.5

35.4

Minor 5ss

40.7

-1

57.8

46.8

Minor BPS

49.1

-0.2

2.3

62.35

46.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005361

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005538

7278577 - 7288702

10126